USU
team finds microbes that eat carcinogens, cleaning soil
cheaply and naturally
By Doan Nguyen
March 4, 2005 | Microbes isolated
by USU researchers in a wood-treatment facility actually
eat carcinogens, raising the significant possibility
of cleaning contaminated soil cheaply, effectively and
naturally.
The microbes, known as mycobacterium isolates, look
upon the cancer-causing agents as eagerly "as we
look at pizza," investigator Ron Sims said.
Sims, biological and irrigation engineering department
head at Utah State University, said that while other
microbes nearby ate plants, decaying vegetation and
simpler chemicals, the organisms found in Libby, Mont.,
remarkably consume carcinogens as their main food source.
The discovery could affect the cleanup of dangerous
chemicals, essentially allowing a natural process to
render them harmless in soil.
The USU team conducted microbiological tests examining
characteristics of three microbes at the contaminated
site. Sims and biology professors Charles Miller, Ann
Anderson and Joanne Hughes concluded that the microbes
were mycobacteria, which they isolated from millions
of organisms in the soil. Two other kinds of mycobacterium
from the Arkansas Toxicology Center was discovered by
Carl Cerniglia, Sims said.
An underground water system near the site was polluted
when creosote, a wood preservative fluid, seeped into
the soil. The fluid is highly toxic because of its polycyclic
aromatic hydrocarbons, or PAHs. Sims said the townspeople
stopped drinking the water before their possible exposure
to the chemical carcinogens. PAHs can cause cancer in
humans when consistently consumed, inhaled or placed
in contact with skin. Sims said the same PAH compounds
are in cigarettes.
"You don't need a lot of carcinogens to get sick.
What happens is the rain dilutes the chemicals out,
making it less concentrated, but the problem is when
people get exposed to it day after day of drinking water,"
Sims said.
Mycobacterium organisms have adapted to extreme environments
-- in this case they are carcinogenic compounds toxic
to humans. This adaptation is similar to the way organisms
found in Yellowstone National Park's hot springs have
adapted to extreme environments of heat, Sims said.
After writing up proposals to clean up the site in
1991, Sims and graduate students brought back soil samples
from the site to USU for analyzing. The group, mostly
focusing on the chemistry of the soil, discovered a
decrease in carcinogens.
At that time, Sims appointed Brian Issa, an undergraduate
biology student, to conduct a side experiment looking
at the soil's microbiology.
As a result of lab tests, Issa recognized the microbes
might have been degrading carcinogens, said Sims.
"I was interested in knowing what was breaking
[the carcinogens] down and if any microorganisms were
resistant to their toxic effects," Issa said.
Because of the diversity of organisms in the soil,
Issa said he thought that it was "entirely possible
that some were chewing up these compounds."
Issa's research hypothesis in 1998-99 led to what is
known today.
Issa said the ability of the organisms were significant
because PAHs are toxic and very resistant to degradation.
Pyrene (one PAH compound) is one of the hardest contaminants
to degrade because it is composed of multiple benzene
rings tightly bonded together, he said.
"Whether or not we could isolate them was another
matter," Issa said. "When we did, we were
then faced with the question of what they were."
Issa did some basic testing to narrow the identity of
the bacteria to mycobacterium. The results were consistent
with other studies that had been done, he said.
The next step was to do genetic work to "characterize
these critters" and to see if he had found something
new. Unfortunately, Issa had neither the time nor the
focus to take the project any further, he said.
"I currently work as a city planner in Oregon,
focusing on environmental planning around wetlands and
storm water issues," said the former student, who
now has his master's degree from the University of Oregon
in community and regional planning.
Long after Issa left USU, Sims' research team decided
to take another look at Issa's project with more of
a biological focus.
"The past 10 to 12 years have resulted in identifying
these organisms," Sims said. The research has included
biology, bio-engineering and environmental engineering
students going for bachelor's, master's or doctoral
degrees. In the past, groups have taken soil samples
from many sites in Florida, Mississippi, Oklahoma, Canada
and the Netherlands.
Today, most biology researchers are examining frozen
samples from sites never visited, Sims said. There are
thousands of wood-treatment sites in the world. Researchers
are interested in knowing which sites have the mycobacterium.
The purpose of this project is to restore the contaminated
soil so that it can serve society. Sims said the Libby
site couldn't be used to grow crops nor have people
living there because of its dangers.
"We are working on sustainability," Sims
said.
Bioremediation is better for the soil than using chemical
or physical remediation. Using the latter can "hurt"
the soil, he said. The use of heat or incineration will
create unwanted ash when trying to remove carcinogens
in soils. Sims said using of chemicals for remediation
can destroy the "good" organisms in the soil
that allow it to sustain the growth of plants.
"Bioremediation is using nature," Sims said.
"Left over is clean soil." As long as the
carcinogens are in the soil the mycobacterium will eat
the toxic chemicals.
The bioremediation research project is supported by
$1.5 million from the U.S. Department of Energy, however,
bioremediation costs are usually 10 times cheaper than
attempting to clean soils around the world by chemical
and physical means.
USU researchers will soon find the length of each chromosome
in the organism's DNA and how many genes are in
the organism. A "gene probe" will be done
to find out the part of the organism's genetic
makeup, which specifically breaks down the cancer causing
compounds.
"We know they do it, but we only see the result,"
Sims said.
"Understanding the genetics of these organisms
will help us understand how they work," Sims said.
Right now, researchers know that mycobacterium degrade
carcinogens, but not exactly how they do.
The genes and base pairs of the mycobacterium are to
be matched with those in the GenBank, a reserve of gene
sequences. The matched set of genes will allow researches
to find sites that have mycobacterium.
USU researchers are running a gene probe on soils from
Russia. The USU research group is working with the Russian
Federation to find out if the Tartar Stan region has
the organism.
"We have now made up a small piece of the gene
probe. And we will know in one month if these organisms
are similar," Sims said.
Further steps to projects will be figuring out how
to make mycobacterium grow faster in their environment
to efficiently clean soil.
Sims wants the research to improve the environment
and protect people's health.
"Unlike doctors who treat patients with cancer,
we work on trying to prevent the cancerous chemicals
from getting into people's bodies," he said.
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